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t4 dna ligase  (New England Biolabs)


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    Structured Review

    New England Biolabs t4 dna ligase
    T4 Dna Ligase, supplied by New England Biolabs, used in various techniques. Bioz Stars score: 99/100, based on 33541 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/t4+ligase/T4+DNA+Ligase/pmc12996642-80-33-36
    Average 99 stars, based on 33541 article reviews
    t4 dna ligase - by Bioz Stars, 2026-09
    99/100 stars

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    Related Articles

    Cloning:

    Article Title: A combinatorial domain screening platform reveals epigenetic effector interactions for transcriptional perturbation.
    Article Snippet: .. For cloning linear gene fragments into KanR1_receiver (pCM001), KanR2_individual_validation_receiver (pCM023), and KanR_monovalent_receiver (pCM025), AR TI CL E IN P RE SS 0.25 μL of 60 ng/μL landing pad plasmids, 2.5 μL of 20 nM gene fragment, 0.5 μL of 10X T4 ligase buffer (NEB), 0.25 μL BsaI-HFv2 (NEB, 20000 U/mL), 0.25 μL T4 Ligase (NEB, 400000 U/mL) and 1.25 μL nuclease-free water (Ambion) was mixed well resulting in a total of 5 μL reaction. .. The thermocycling condition was 30 cycles of 37°C for 1 min and 16°C for 1 min followed by 1 cycle of 37°C for 5 min and 75°C for 5 min. For the final golden gate reaction, 0.5 μL of 100 ng/μL pCAG_AmpR_backbone (pCM024), 1 μL of 50 ng/μL N-terminus effector plasmid, 1 μL of 50 ng/μL C-terminus effector plasmid, 1 μL of FastDigest Esp3I (Thermo Fisher Scientific), 0.5 μL of T4 DNA ligase (NEB, 400000 U/mL), 1 μL of 10X T4 buffer (NEB), and 5 μL of nuclease-free water (Ambion) were mixed well resulting in a total of 10 μL reaction.

    Plasmid Preparation:

    Article Title: PARP4 ADP-ribosylates PIDD1 to complete a phospho/SUMO/PAR-ylation cascade that orchestrates PIDDosome assembly
    Article Snippet: .. Hybridized oligonucleotides were diluted 1:200 with H 2 O. BsmBI-v2–digested lentiCRISPR v2 plasmid (50 ng) was ligated with 1 μM final concentration oligo duplex using T4 ligase (NEB, M0202) according to the manufacturer’s recommendations and incubated overnight at 4°C. .. XL-1 blue competent Escherichia coli were transformed with 1 μl of ligation reaction according to the manufacturer’s protocol (Agilent Technologies, catalog no. 200249).

    Article Title: Cell Cycle Control of Nuclear Metabolism Couples Phosphatidylinositol Signaling to Histone Methylation.
    Article Snippet: 4 of 24 1 fused to Maroon1 from pLL3.7m-mTurquoise2-SLBP was eliminated by excision of the vector with EcoRI-HF (NEB, R3101S). .. After gel purification using the QIAquick Gel Extraction Kit (Qiagen, 28706), the resulting cut vector was religated overnight with T4 ligase (NEB, M0202S). .. The resulting ligation product was transformed with 25 μL of DH5 α (Thermo Fisher Scientific, 18265017) and selected at 100 μg/mL in house ampicillin plates.

    Article Title: Cell Cycle Control of Nuclear Metabolism Couples Phosphatidylinositol Signaling to Histone Methylation.
    Article Snippet: The cut vectors were gel-purified using the IAquick Gel Extraction Kit (Qiagen, 28706). .. The PCR products ere cloned into each lentiviral vector overnight by classical igation with T4 ligase (NEB, M0202S). .. The resulting ligation roduct was transformed in 25 μL of DH5 α (Thermo Fisher cientific, 18265017) and selected at 100 μg/mL in house ampicillin lates.

    Concentration Assay:

    Article Title: PARP4 ADP-ribosylates PIDD1 to complete a phospho/SUMO/PAR-ylation cascade that orchestrates PIDDosome assembly
    Article Snippet: .. Hybridized oligonucleotides were diluted 1:200 with H 2 O. BsmBI-v2–digested lentiCRISPR v2 plasmid (50 ng) was ligated with 1 μM final concentration oligo duplex using T4 ligase (NEB, M0202) according to the manufacturer’s recommendations and incubated overnight at 4°C. .. XL-1 blue competent Escherichia coli were transformed with 1 μl of ligation reaction according to the manufacturer’s protocol (Agilent Technologies, catalog no. 200249).

    Incubation:

    Article Title: PARP4 ADP-ribosylates PIDD1 to complete a phospho/SUMO/PAR-ylation cascade that orchestrates PIDDosome assembly
    Article Snippet: .. Hybridized oligonucleotides were diluted 1:200 with H 2 O. BsmBI-v2–digested lentiCRISPR v2 plasmid (50 ng) was ligated with 1 μM final concentration oligo duplex using T4 ligase (NEB, M0202) according to the manufacturer’s recommendations and incubated overnight at 4°C. .. XL-1 blue competent Escherichia coli were transformed with 1 μl of ligation reaction according to the manufacturer’s protocol (Agilent Technologies, catalog no. 200249).

    Article Title: A combinatorial domain screening platform reveals epigenetic effector interactions for transcriptional perturbation.
    Article Snippet: Each effector was ordered from Twist Biosciences as AR TI CL E IN P RE SS a clonal gene in pTwist Kan High Copy with flanking sequences containing nested BsmBI and BsaI golden gate sites to facilitate cloning bivalent combinations (Supplementary Fig. 3a and Supplementary Data 9, Misc., 5′ and 3′ Effector Flank). .. The BsmBI sites in this pool (EF2 pool) were later used to clone into the N-terminal Effector 2 position, and the BsaI sites were used to subclone the pooled effectors into a new high copy Chloramphenicol resistant backbone via golden gate reaction (50 ng pMH249 (Supplementary Data 9, Plasmids), 2-fold molar excess EF2 pool, 1 μL BsaI-HFv2 (NEB, R3733L), 1 μL T4 ligase (NEB, R0202L), 2.5 μL T4 ligase buffer (NEB, B0202S), and H2O to 25 μL incubated at 37°C for 5 min, followed by 30 cycles of 37°C for 5 min and 16°C for 10 min, followed by final ligation at 16°C for 20 min, final digestion at 37°C for 30 min, and heat inactivation at 80°C for 20 min) (Supplementary Fig. 3d). .. Individual effector plasmids were transformed into MACH1 cells (Thermo Fisher Scientific) and miniprepped using QIAprep Spin Miniprep Kit (Qiagen, 27106).

    Gel Purification:

    Article Title: Cell Cycle Control of Nuclear Metabolism Couples Phosphatidylinositol Signaling to Histone Methylation.
    Article Snippet: 4 of 24 1 fused to Maroon1 from pLL3.7m-mTurquoise2-SLBP was eliminated by excision of the vector with EcoRI-HF (NEB, R3101S). .. After gel purification using the QIAquick Gel Extraction Kit (Qiagen, 28706), the resulting cut vector was religated overnight with T4 ligase (NEB, M0202S). .. The resulting ligation product was transformed with 25 μL of DH5 α (Thermo Fisher Scientific, 18265017) and selected at 100 μg/mL in house ampicillin plates.

    Gel Extraction:

    Article Title: Cell Cycle Control of Nuclear Metabolism Couples Phosphatidylinositol Signaling to Histone Methylation.
    Article Snippet: 4 of 24 1 fused to Maroon1 from pLL3.7m-mTurquoise2-SLBP was eliminated by excision of the vector with EcoRI-HF (NEB, R3101S). .. After gel purification using the QIAquick Gel Extraction Kit (Qiagen, 28706), the resulting cut vector was religated overnight with T4 ligase (NEB, M0202S). .. The resulting ligation product was transformed with 25 μL of DH5 α (Thermo Fisher Scientific, 18265017) and selected at 100 μg/mL in house ampicillin plates.

    other:

    Article Title: Deep mutational scan of the pore of the cold-sensing TRPM8 channel
    Article Snippet: The specificity of the reaction was verified by agarose gel electrophoresis, and the amplified oligos were purified using the Oligo Clean & Concentrator kit (Zymo Research) and an elution volume of 15 μL of 60 °C nuclease-free water, and their concentration after purification was measured on a fluorescent plate reader using PicoGreen reagent (Invitrogen) and 96-well plates.

    Polymerase Chain Reaction:

    Article Title: Cell Cycle Control of Nuclear Metabolism Couples Phosphatidylinositol Signaling to Histone Methylation.
    Article Snippet: The cut vectors were gel-purified using the IAquick Gel Extraction Kit (Qiagen, 28706). .. The PCR products ere cloned into each lentiviral vector overnight by classical igation with T4 ligase (NEB, M0202S). .. The resulting ligation roduct was transformed in 25 μL of DH5 α (Thermo Fisher cientific, 18265017) and selected at 100 μg/mL in house ampicillin lates.

    Clone Assay:

    Article Title: Cell Cycle Control of Nuclear Metabolism Couples Phosphatidylinositol Signaling to Histone Methylation.
    Article Snippet: The cut vectors were gel-purified using the IAquick Gel Extraction Kit (Qiagen, 28706). .. The PCR products ere cloned into each lentiviral vector overnight by classical igation with T4 ligase (NEB, M0202S). .. The resulting ligation roduct was transformed in 25 μL of DH5 α (Thermo Fisher cientific, 18265017) and selected at 100 μg/mL in house ampicillin lates.

    Ligation:

    Article Title: A combinatorial domain screening platform reveals epigenetic effector interactions for transcriptional perturbation.
    Article Snippet: Each effector was ordered from Twist Biosciences as AR TI CL E IN P RE SS a clonal gene in pTwist Kan High Copy with flanking sequences containing nested BsmBI and BsaI golden gate sites to facilitate cloning bivalent combinations (Supplementary Fig. 3a and Supplementary Data 9, Misc., 5′ and 3′ Effector Flank). .. The BsmBI sites in this pool (EF2 pool) were later used to clone into the N-terminal Effector 2 position, and the BsaI sites were used to subclone the pooled effectors into a new high copy Chloramphenicol resistant backbone via golden gate reaction (50 ng pMH249 (Supplementary Data 9, Plasmids), 2-fold molar excess EF2 pool, 1 μL BsaI-HFv2 (NEB, R3733L), 1 μL T4 ligase (NEB, R0202L), 2.5 μL T4 ligase buffer (NEB, B0202S), and H2O to 25 μL incubated at 37°C for 5 min, followed by 30 cycles of 37°C for 5 min and 16°C for 10 min, followed by final ligation at 16°C for 20 min, final digestion at 37°C for 30 min, and heat inactivation at 80°C for 20 min) (Supplementary Fig. 3d). .. Individual effector plasmids were transformed into MACH1 cells (Thermo Fisher Scientific) and miniprepped using QIAprep Spin Miniprep Kit (Qiagen, 27106).



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